STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGG14351.1ABC-type transport system, involved in lipoprotein release, permease component; IMG reference gene:2506376888; PFAM: MacB-like periplasmic core domain; FtsX-like permease family; PFAM: protein of unknown function DUF214; SPTR: Putative uncharacterized protein; KEGG: sul:SYO3AOP1_0313 protein of unknown function DUF214; InterPro IPR003838. (380 aa)    
Predicted Functional Partners:
AGG14350.1
IMG reference gene:2506376887; PFAM: ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; KEGG: sul:SYO3AOP1_0312 ABC transporter related; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR017871:IPR003439:IPR003593.
 
 0.992
AGG14349.1
IMG reference gene:2506376886; PFAM: HlyD family secretion protein; KEGG: sul:SYO3AOP1_0311 secretion protein HlyD family protein; PFAM: secretion protein HlyD family protein; SPTR: Secretion protein HlyD family protein; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143.
 
   
 0.930
AGG14779.1
IMG reference gene:2506377340; PFAM: ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; KEGG: aae:aq_417 ABC transporter; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593.
  
 0.917
AGG14348.1
RND efflux system, outer membrane lipoprotein, NodT family; IMG reference gene:2506376885; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; SPTR: RND efflux system, outer membrane lipoprotein, NodT family; KEGG: sul:SYO3AOP1_0310 RND efflux system, outer membrane lipoprotein, NodT family; COGs: COG1538 Outer membrane protein; InterPro IPR003423:IPR010131.
 
    0.833
AGG15312.1
IMG reference gene:2506377908; PFAM: ABC transporter; ABC transporter transmembrane region; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: ABC transporter related protein; KEGG: aae:aq_1563 ABC transporter; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR017871:IPR003439:IPR017940:IPR001140:IPR 003593.
    
 0.576
AGG14540.1
IMG reference gene:2506377091; PFAM: Predicted permease YjgP/YjgQ family; manually curated; PFAM: permease YjgP/YjgQ family protein; SPTR: Permease YjgP/YjgQ family protein; KEGG: aae:aq_359 hypothetical protein; COGs: COG0795 permease; InterPro IPR005495.
  
  
 0.510
AGG14636.1
IMG reference gene:2506377193; PFAM: ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; KEGG: aae:aq_413 ABC transporter; COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR017871:IPR003439:IPR003593.
     
  0.508
AGG15254.1
Molybdate ABC transporter, inner membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
     
  0.508
AGG15255.1
IMG reference gene:2506377848; PFAM: ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; KEGG: hth:HTH_1317 molybdenum ABC transporter ATP-binding protein; COGs: COG1118 ABC-type sulfate/molybdate transport systems ATPase component; InterPro IPR017871:IPR003439:IPR003593.
     
  0.508
AGG14715.1
IMG reference gene:2506377272; PFAM: NIL domain; PFAM: NIL domain; SPTR: NIL domain protein; KEGG: hth:HTH_1600 iron-sulfur cluster-binding protein; InterPro IPR018449.
     
 0.458
Your Current Organism:
Hydrogenobaculum sp. HO
NCBI taxonomy Id: 547144
Other names: H. sp. HO
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