STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGG14351.1ABC-type transport system, involved in lipoprotein release, permease component; IMG reference gene:2506376888; PFAM: MacB-like periplasmic core domain; FtsX-like permease family; PFAM: protein of unknown function DUF214; SPTR: Putative uncharacterized protein; KEGG: sul:SYO3AOP1_0313 protein of unknown function DUF214; InterPro IPR003838. (380 aa)    
Predicted Functional Partners:
AGG14350.1
IMG reference gene:2506376887; PFAM: ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; KEGG: sul:SYO3AOP1_0312 ABC transporter related; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR017871:IPR003439:IPR003593.
 
 
 0.992
AGG14349.1
IMG reference gene:2506376886; PFAM: HlyD family secretion protein; KEGG: sul:SYO3AOP1_0311 secretion protein HlyD family protein; PFAM: secretion protein HlyD family protein; SPTR: Secretion protein HlyD family protein; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143.
 
     0.930
AGG14779.1
IMG reference gene:2506377340; PFAM: ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; KEGG: aae:aq_417 ABC transporter; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593.
  
 
 0.918
AGG14348.1
RND efflux system, outer membrane lipoprotein, NodT family; IMG reference gene:2506376885; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; SPTR: RND efflux system, outer membrane lipoprotein, NodT family; KEGG: sul:SYO3AOP1_0310 RND efflux system, outer membrane lipoprotein, NodT family; COGs: COG1538 Outer membrane protein; InterPro IPR003423:IPR010131.
 
  
 0.835
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
   
   0.456
AGG15849.1
Hypothetical protein; IMG reference gene:2506378473; SPTR: Putative uncharacterized protein; KEGG: ace:Acel_0443 hypothetical protein.
  
     0.403
Your Current Organism:
Hydrogenobaculum sp. HO
NCBI taxonomy Id: 547144
Other names: H. sp. HO
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