Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGG14438.1Protein of unknown function DUF2173; IMG reference gene:2506376982; PFAM: Uncharacterized conserved protein (DUF2173); PFAM: Protein of unknown function DUF2173; SPTR: Putative uncharacterized protein; KEGG: aae:aq_087 hypothetical protein; COGs: COG4831 conserved hypothetical protein; InterPro IPR018685. (113 aa)    
Predicted Functional Partners:
AGG14439.1
Protein of unknown function DUF2173; IMG reference gene:2506376983; PFAM: Uncharacterized conserved protein (DUF2173); PFAM: Protein of unknown function DUF2173; SPTR: Putative uncharacterized protein; KEGG: hth:HTH_0348 hypothetical protein; COGs: COG4831 conserved hypothetical protein; InterPro IPR018685.
      
0.808
AGG14440.1
Sterol-binding domain protein; IMG reference gene:2506376984; PFAM: SCP-2 sterol transfer family; PFAM: Sterol-binding domain protein; SPTR: Sterol-binding domain protein; KEGG: aae:aq_090 hypothetical protein; InterPro IPR003033.
       0.650
AGG14441.1
PAS modulated sigma54 specific transcriptional regulator, Fis family; IMG reference gene:2506376985; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-4 domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase; PAS domain containing protein; SPTR: PAS modulated sigma54 specific transcriptional regulator, Fis family; KEGG: hth:HTH_0346 sigma 54 specific transcriptional regulator, fis family; COGs: COG3829 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains; I [...]
       0.646
AGG14437.1
IMG reference gene:2506376981; PFAM: Lysine-2,3-aminomutase; Radical SAM superfamily; 4Fe-4S single cluster domain; TIGRFAM: KamA family protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PRIAM: Lysine 2,3-aminomutase; PFAM: Radical SAM domain protein; SPTR: Lysine 2,3-aminomutase YodO family protein; KEGG: aae:aq_454 hypothetical protein; COGs: COG1509 Lysine 2 3-aminomutase; InterPro IPR007197:IPR003739.
       0.462
Your Current Organism:
Hydrogenobaculum sp. HO
NCBI taxonomy Id: 547144
Other names: H. sp. HO
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