STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGG14467.1Diguanylate cyclase; IMG reference gene:2506377015; SPTR: Putative uncharacterized protein; KEGG: hor:Hore_05220 diguanylate cyclase. (38 aa)    
Predicted Functional Partners:
secF
Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
       0.584
AGG14468.1
IMG reference gene:2506377016; PFAM: Pyridine nucleotide-disulfide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; SPTR: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; KEGG: hth:HTH_1339 sulfide:quinone oxidoreductase; COGs: COG1252 NADH dehydrogenase FAD-containing subunit; InterPro IPR013027.
       0.495
trmD
tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
       0.431
AGG14463.1
Hypothetical protein; IMG reference gene:2506377011; PFAM: Putative F0F1-ATPase subunit (ATPase_gene1); SPTR: Putative uncharacterized protein; KEGG: hth:HTH_1782 hypothetical protein.
       0.431
AGG14464.1
Prephenate dehydratase; IMG reference gene:2506377012; PFAM: Prephenate dehydratase; ACT domain; Chorismate mutase type II; PFAM: prephenate dehydratase; Chorismate mutase, type II; amino acid-binding ACT domain protein; SPTR: Prephenate dehydratase; KEGG: aae:aq_951 chorismate mutase/prephenate dehydratase; COGs: COG0077 Prephenate dehydratase; InterProIPR018528:IPR020822:IPR001086:IPR002912:IPR 002701:IPR008242.
       0.431
AGG14465.1
Hypothetical protein; IMG reference gene:2506377013; SPTR: Putative uncharacterized protein; KEGG: hth:HTH_0274 hypothetical protein.
       0.431
AGG14469.1
Hypothetical protein; IMG reference gene:2506377017; SPTR: Putative uncharacterized protein.
       0.403
Your Current Organism:
Hydrogenobaculum sp. HO
NCBI taxonomy Id: 547144
Other names: H. sp. HO
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.