STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGG14568.1Putative metal-binding protein, possibly nucleic-acid binding protein; IMG reference gene:2506377121; PFAM: Uncharacterized ACR, COG1399; manually curated; PFAM: protein of unknown function DUF177; SPTR: Putative uncharacterized protein; KEGG: tal:Thal_0183 protein of unknown function DUF177; InterPro IPR003772. (171 aa)    
Predicted Functional Partners:
rpmF
Ribosomal protein L32; IMG reference gene:2506377122; PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; SPTR: 50S ribosomal protein L32; KEGG: tal:Thal_0899 ribosomal protein L32; COGs: COG0333 Ribosomal protein L32; InterPro IPR002677; Belongs to the bacterial ribosomal protein bL32 family.
  
  
 0.980
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
   0.965
rplK
LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
   
    0.887
plsX
Phosphate:acyl-(acyl carrier protein) acyltransferase; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.
  
    0.881
rpsP
Ribosomal protein S16; IMG reference gene:2506377189; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; SPTR: 30S ribosomal protein S16; KEGG: tal:Thal_0358 ribosomal protein S16; COGs: COG0228 Ribosomal protein S16; InterPro IPR020592:IPR000307; Belongs to the bacterial ribosomal protein bS16 family.
  
    0.880
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
    0.880
infC
Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
  
    0.876
rpsB
Ribosomal protein S2; IMG reference gene:2506378182; PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; SPTR: 30S ribosomal protein S2; KEGG: hth:HTH_0694 ribosomal protein S2; COGs: COG0052 Ribosomal protein S2; InterPro IPR018130:IPR001865:IPR005706; Belongs to the universal ribosomal protein uS2 family.
  
    0.876
trmD
tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
  
    0.869
rplA
Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.
   
  
 0.869
Your Current Organism:
Hydrogenobaculum sp. HO
NCBI taxonomy Id: 547144
Other names: H. sp. HO
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.