STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
AGG14702.1Putative permease; IMG reference gene:2506377259; PFAM: Domain of unknown function DUF20; PFAM: protein of unknown function UPF0118; SPTR: Putative uncharacterized protein; KEGG: hth:HTH_0361 putative permease; COGs: COG0628 permease; InterPro IPR002549. (353 aa)    
Predicted Functional Partners:
AGG14704.1
IMG reference gene:2506377261; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PRIAM: Tryptophan--tRNA ligase; PFAM: aminoacyl-tRNA synthetase class Ib; SPTR: Tryptophanyl-tRNA synthetase; KEGG: hth:HTH_1053 tryptophanyl-tRNA synthetase; COGs: COG0180 Tryptophanyl-tRNA synthetase; InterPro IPR002306:IPR001412:IPR002305.
       0.810
AGG14706.1
Zn-ribbon protein, possibly nucleic acid-binding protein; IMG reference gene:2506377263; PFAM: Putative zinc ribbon domain; SPTR: Putative uncharacterized protein; PFAM: protein of unknown function DUF164; KEGG: aae:aq_1223 hypothetical protein; COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; InterPro IPR003743.
 
     0.806
engB
Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
       0.792
AGG14705.1
Peptidase M50; IMG reference gene:2506377262; PFAM: Peptidase family M50; PFAM: peptidase M50; SPTR: Peptidase M50; KEGG: hth:HTH_0487 Zn-dependent protease; COGs: COG1994 Zn-dependent protease; InterPro IPR008915.
       0.781
atpE
ATP synthase F0 subcomplex C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
     
  0.764
AGG14707.1
IMG reference gene:2506377264; PFAM: Radical SAM superfamily; 4Fe-4S single cluster domain; PFAM: Radical SAM domain protein; SPTR: Radical SAM domain protein; KEGG: aae:aq_1861 hypothetical protein; COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterPro IPR016431:IPR007197.
       0.678
AGG14708.1
IMG reference gene:2506377265; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; SPTR: Thioesterase superfamily protein; KEGG: dsa:Desal_0387 thioesterase superfamily protein; COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683.
       0.565
uppP
Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
 
  
 0.534
AGG14348.1
RND efflux system, outer membrane lipoprotein, NodT family; IMG reference gene:2506376885; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; SPTR: RND efflux system, outer membrane lipoprotein, NodT family; KEGG: sul:SYO3AOP1_0310 RND efflux system, outer membrane lipoprotein, NodT family; COGs: COG1538 Outer membrane protein; InterPro IPR003423:IPR010131.
  
     0.460
AGG14709.1
Putative DNA metabolism protein; IMG reference gene:2506377266; PFAM: Domain of unknown function (DUF4130; TIGRFAM: probable DNA metabolism protein; SPTR: Putative uncharacterized protein; KEGG: cbk:CLL_A3034 hypothetical protein.
  
    0.415
Your Current Organism:
Hydrogenobaculum sp. HO
NCBI taxonomy Id: 547144
Other names: H. sp. HO
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