STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB79348.1Putative copper resistance protein D. (333 aa)    
Predicted Functional Partners:
SFB79305.1
Ubiquinol-cytochrome c reductase cytochrome c subunit.
 
    0.852
SFB79328.1
Cytochrome c oxidase subunit 3.
 
    0.829
SFB79283.1
Ubiquinol-cytochrome c reductase iron-sulfur subunit.
 
    0.769
SFB79261.1
Ubiquinol-cytochrome c reductase cytochrome b subunit.
 
    0.754
SFD39217.1
Ubiquinol-cytochrome c reductase cytochrome c subunit.
 
    0.749
SFB85901.1
Cytochrome c oxidase assembly protein subunit 15.
 
   
 0.673
SFD39240.1
Ubiquinol-cytochrome c reductase iron-sulfur subunit.
 
    0.627
SFB79437.1
Cytochrome c oxidase subunit IV; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.600
SFB79463.1
Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
  
 0.597
SFB79373.1
Hypothetical protein.
       0.575
Your Current Organism:
Verrucosispora sediminis
NCBI taxonomy Id: 547162
Other names: CGMCC 4.3550, JCM 15670, V. sediminis, Verrucosispora sediminis Dai et al. 2010, Verrucosispora sp. MS426, strain MS426
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.