STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB80523.1Protein of unknown function. (239 aa)    
Predicted Functional Partners:
rbpA-2
RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.753
SFC28580.1
MerR HTH family regulatory protein.
  
     0.742
SFD63205.1
Protein of unknown function.
  
     0.726
SFD62294.1
Protein of unknown function.
  
     0.723
SFC82795.1
Protein of unknown function.
  
   
 0.704
SFD63891.1
Protein of unknown function.
  
     0.696
SFB79667.1
Protein of unknown function.
 
     0.692
SFC97623.1
Putative hydrolase.
  
     0.677
SFC78730.1
Broad specificity phosphatase PhoE.
  
     0.642
SFD47346.1
Predicted nucleic acid-binding protein, contains Zn-ribbon domain (includes truncated derivatives).
  
     0.631
Your Current Organism:
Verrucosispora sediminis
NCBI taxonomy Id: 547162
Other names: CGMCC 4.3550, JCM 15670, V. sediminis, Verrucosispora sediminis Dai et al. 2010, Verrucosispora sp. MS426, strain MS426
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