STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC19992.1Hypothetical protein. (153 aa)    
Predicted Functional Partners:
SFC55295.1
Acetyl/propionyl-CoA carboxylase, alpha subunit.
  
  
  0.556
SFC78439.1
TIGR03086 family protein.
  
     0.544
SFD75962.1
Glyoxylase, beta-lactamase superfamily II.
  
  
  0.523
SFD03817.1
Major Facilitator Superfamily protein.
  
     0.519
SFD41166.1
Glyoxylase, beta-lactamase superfamily II.
  
  
  0.511
SFD18022.1
TIGR03086 family protein.
  
     0.504
SFD27453.1
Hypothetical protein.
  
     0.439
Your Current Organism:
Verrucosispora sediminis
NCBI taxonomy Id: 547162
Other names: CGMCC 4.3550, JCM 15670, V. sediminis, Verrucosispora sediminis Dai et al. 2010, Verrucosispora sp. MS426, strain MS426
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.