STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC25056.1Glycosyltransferase Family 4. (344 aa)    
Predicted Functional Partners:
SFC25089.1
Methyltransferase domain-containing protein.
     0.972
SFC25029.1
6-pyruvoyl-tetrahydropterin synthase.
 
     0.957
SFC24994.1
Threonine dehydrogenase.
 
    0.953
SFC25119.1
Uncharacterized membrane protein YbhN, UPF0104 family.
 
    0.916
SFC24965.1
Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
  
  0.907
SFC24933.1
Phosphoglycerol transferase MdoB.
 
  
  0.904
SFC25180.1
5-amino-6-(5-phosphoribosylamino)uracil reductase.
 
     0.791
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.672
SFC43289.1
Maltooligosyltrehalose trehalohydrolase.
   
 0.659
SFC25146.1
GTP cyclohydrolase II.
       0.595
Your Current Organism:
Verrucosispora sediminis
NCBI taxonomy Id: 547162
Other names: CGMCC 4.3550, JCM 15670, V. sediminis, Verrucosispora sediminis Dai et al. 2010, Verrucosispora sp. MS426, strain MS426
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