STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC26945.1Beta-galactosidase. (674 aa)    
Predicted Functional Partners:
SFC00703.1
Beta-mannosidase.
 
 
 0.940
SFC21955.1
Hypothetical protein.
  
 0.908
SFC26914.1
alpha-D-xyloside xylohydrolase; Belongs to the glycosyl hydrolase 31 family.
 
 
 0.904
SFD17868.1
Beta-galactosidase.
  
  
 
0.884
SFC82925.1
Aldose 1-epimerase.
  
 
 0.880
SFC20837.1
Alpha-galactosidase.
    
 0.875
SFD36047.1
Aryl-phospho-beta-D-glucosidase BglC, GH1 family.
 
 
  0.858
SFC55520.1
Aryl-phospho-beta-D-glucosidase BglC, GH1 family.
 
 
  0.857
SFD40698.1
Hypothetical protein.
   
 0.854
SFC44549.1
Hypothetical protein.
   
 0.844
Your Current Organism:
Verrucosispora sediminis
NCBI taxonomy Id: 547162
Other names: CGMCC 4.3550, JCM 15670, V. sediminis, Verrucosispora sediminis Dai et al. 2010, Verrucosispora sp. MS426, strain MS426
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.