STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC37992.1Methane oxygenase PmoA. (299 aa)    
Predicted Functional Partners:
SFC37631.1
Predicted dehydrogenase.
     0.981
SFC37841.1
Multiple sugar transport system substrate-binding protein.
 
     0.887
SFC37905.1
Multiple sugar transport system permease protein.
 
     0.854
SFC37873.1
Multiple sugar transport system permease protein.
 
     0.852
SFC25804.1
Sugar phosphate isomerase/epimerase.
 
 
  0.812
SFC37940.1
Hypothetical protein.
       0.785
SFC37593.1
Pectate lyase.
 
     0.745
SFC37806.1
Transcriptional regulator, LacI family.
      0.671
SFC25765.1
Protein of unknown function.
 
    0.650
SFC25736.1
Predicted dehydrogenase.
  
     0.614
Your Current Organism:
Verrucosispora sediminis
NCBI taxonomy Id: 547162
Other names: CGMCC 4.3550, JCM 15670, V. sediminis, Verrucosispora sediminis Dai et al. 2010, Verrucosispora sp. MS426, strain MS426
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.