STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC40312.13',5'-cyclic AMP phosphodiesterase CpdA. (289 aa)    
Predicted Functional Partners:
SFC44549.1
Hypothetical protein.
    
 0.956
SFC78621.1
Signal transduction histidine kinase.
  
 
 0.912
SFD07602.1
tRNA (adenine57-N1/adenine58-N1)-methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.
    
  0.798
SFC08486.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.735
SFD75940.1
5'-nucleotidase.
  
 
 0.715
SFC69182.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.713
SFD33674.1
4'-phosphopantetheinyl transferase EntD (siderophore biosynthesis); Belongs to the P-Pant transferase superfamily.
 
  
 0.694
SFD57979.1
AAA ATPase domain-containing protein.
    
 0.642
SFB78693.1
Predicted ATPase.
     
 0.634
SFC39324.1
AAA ATPase domain-containing protein.
     
 0.634
Your Current Organism:
Verrucosispora sediminis
NCBI taxonomy Id: 547162
Other names: CGMCC 4.3550, JCM 15670, V. sediminis, Verrucosispora sediminis Dai et al. 2010, Verrucosispora sp. MS426, strain MS426
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