STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC41887.1Protein-tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (184 aa)    
Predicted Functional Partners:
SFD41166.1
Glyoxylase, beta-lactamase superfamily II.
   
   0.916
SFD41795.1
Glyoxylase, beta-lactamase superfamily II.
   
   0.916
SFD75962.1
Glyoxylase, beta-lactamase superfamily II.
   
   0.916
SFD00132.1
Protein-tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
 
0.824
SFC41856.1
Capsular exopolysaccharide family.
 
 
 0.673
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.622
SFB87033.1
Protein-tyrosine phosphatase.
     
 0.617
SFB99755.1
Protein tyrosine/serine phosphatase.
     
 0.617
SFC41944.1
Protein of unknown function.
 
  
  0.607
SFD66541.1
Undecaprenyl-phosphate galactose phosphotransferase, WbaP/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
 
 0.604
Your Current Organism:
Verrucosispora sediminis
NCBI taxonomy Id: 547162
Other names: CGMCC 4.3550, JCM 15670, V. sediminis, Verrucosispora sediminis Dai et al. 2010, Verrucosispora sp. MS426, strain MS426
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