STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC35295.1Short-chain dehydrogenase. (280 aa)    
Predicted Functional Partners:
SFD51418.1
6-methylsalicylic acid synthase.
  
 0.906
SFD19596.1
Amino acid adenylation domain-containing protein.
  
 0.891
SFD74827.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.861
SFC53239.1
Amino acid adenylation domain-containing protein.
  
 
 0.854
SFD74782.1
Phosphopantetheine attachment site.
  
 
 0.854
SFD50707.1
Enediyne polyketide synthase.
   
 0.817
SFB88442.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.695
SFC62262.1
Predicted naringenin-chalcone synthase.
    
  0.669
SFD41893.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
 
 0.659
SFD80635.1
Amino acid adenylation domain-containing protein.
  
 
 0.659
Your Current Organism:
Verrucosispora sediminis
NCBI taxonomy Id: 547162
Other names: CGMCC 4.3550, JCM 15670, V. sediminis, Verrucosispora sediminis Dai et al. 2010, Verrucosispora sp. MS426, strain MS426
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.