STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC54941.1D-psicose/D-tagatose/L-ribulose 3-epimerase. (283 aa)    
Predicted Functional Partners:
SFC54910.1
Ribose transport system substrate-binding protein.
 
    0.949
SFC54881.1
Ribose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.904
SFC54855.1
Ribose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.895
SFC54822.1
Ribose transport system ATP-binding protein.
 
    0.728
SFC54791.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
 
   
 0.722
SFC70742.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
 
   
 0.657
SFC70720.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
 
   
 0.645
SFC09156.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
 
   
 0.635
SFC54971.1
Ricin-type beta-trefoil lectin domain-containing protein.
 
     0.623
SFD30497.1
Phenazine biosynthesis protein phzE.
    
  0.621
Your Current Organism:
Verrucosispora sediminis
NCBI taxonomy Id: 547162
Other names: CGMCC 4.3550, JCM 15670, V. sediminis, Verrucosispora sediminis Dai et al. 2010, Verrucosispora sp. MS426, strain MS426
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.