Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFC22229.1 | SFC43852.1 | SAMN05216284_103224 | SAMN05216284_104307 | Hypothetical protein. | Putative transcriptional regulator. | 0.403 |
SFC22229.1 | SFC57800.1 | SAMN05216284_103224 | SAMN05216284_105304 | Hypothetical protein. | DNA-binding transcriptional regulator, XRE-family HTH domain. | 0.403 |
SFC22229.1 | SFC66369.1 | SAMN05216284_103224 | SAMN05216284_106157 | Hypothetical protein. | TIGR03083 family protein. | 0.563 |
SFC43852.1 | SFC22229.1 | SAMN05216284_104307 | SAMN05216284_103224 | Putative transcriptional regulator. | Hypothetical protein. | 0.403 |
SFC43852.1 | SFC57800.1 | SAMN05216284_104307 | SAMN05216284_105304 | Putative transcriptional regulator. | DNA-binding transcriptional regulator, XRE-family HTH domain. | 0.771 |
SFC43852.1 | SFC66369.1 | SAMN05216284_104307 | SAMN05216284_106157 | Putative transcriptional regulator. | TIGR03083 family protein. | 0.956 |
SFC57666.1 | SFC57708.1 | SAMN05216284_105300 | SAMN05216284_105301 | DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. | Signal transduction histidine kinase. | 0.975 |
SFC57666.1 | SFC57738.1 | SAMN05216284_105300 | SAMN05216284_105302 | DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. | ABC-2 type transport system ATP-binding protein. | 0.527 |
SFC57666.1 | SFC57769.1 | SAMN05216284_105300 | SAMN05216284_105303 | DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. | ABC-2 type transport system permease protein. | 0.527 |
SFC57666.1 | SFC57800.1 | SAMN05216284_105300 | SAMN05216284_105304 | DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. | DNA-binding transcriptional regulator, XRE-family HTH domain. | 0.502 |
SFC57708.1 | SFC57666.1 | SAMN05216284_105301 | SAMN05216284_105300 | Signal transduction histidine kinase. | DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. | 0.975 |
SFC57708.1 | SFC57738.1 | SAMN05216284_105301 | SAMN05216284_105302 | Signal transduction histidine kinase. | ABC-2 type transport system ATP-binding protein. | 0.538 |
SFC57708.1 | SFC57769.1 | SAMN05216284_105301 | SAMN05216284_105303 | Signal transduction histidine kinase. | ABC-2 type transport system permease protein. | 0.538 |
SFC57708.1 | SFC57800.1 | SAMN05216284_105301 | SAMN05216284_105304 | Signal transduction histidine kinase. | DNA-binding transcriptional regulator, XRE-family HTH domain. | 0.511 |
SFC57738.1 | SFC57666.1 | SAMN05216284_105302 | SAMN05216284_105300 | ABC-2 type transport system ATP-binding protein. | DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. | 0.527 |
SFC57738.1 | SFC57708.1 | SAMN05216284_105302 | SAMN05216284_105301 | ABC-2 type transport system ATP-binding protein. | Signal transduction histidine kinase. | 0.538 |
SFC57738.1 | SFC57769.1 | SAMN05216284_105302 | SAMN05216284_105303 | ABC-2 type transport system ATP-binding protein. | ABC-2 type transport system permease protein. | 0.980 |
SFC57738.1 | SFC57800.1 | SAMN05216284_105302 | SAMN05216284_105304 | ABC-2 type transport system ATP-binding protein. | DNA-binding transcriptional regulator, XRE-family HTH domain. | 0.865 |
SFC57769.1 | SFC57666.1 | SAMN05216284_105303 | SAMN05216284_105300 | ABC-2 type transport system permease protein. | DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. | 0.527 |
SFC57769.1 | SFC57708.1 | SAMN05216284_105303 | SAMN05216284_105301 | ABC-2 type transport system permease protein. | Signal transduction histidine kinase. | 0.538 |
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