STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC49523.1Protein of unknown function. (64 aa)    
Predicted Functional Partners:
SFC49552.1
Helix-turn-helix domain-containing protein.
 
     0.882
SFD46064.1
Protein of unknown function.
  
     0.704
SFD24833.1
Protein of unknown function.
  
     0.678
SFD56149.1
Putative S-adenosyl-L-methionine-dependent methyltransferase.
  
     0.662
SFC49492.1
Hypothetical protein.
       0.598
SFC07172.1
Part of AAA domain-containing protein.
  
     0.597
SFC08544.1
Hypothetical protein.
  
     0.588
SFD34730.1
Hypothetical protein.
  
     0.558
SFC08518.1
Hypothetical protein.
  
     0.526
SFB87139.1
Helix-turn-helix domain-containing protein.
  
     0.518
Your Current Organism:
Verrucosispora sediminis
NCBI taxonomy Id: 547162
Other names: CGMCC 4.3550, JCM 15670, V. sediminis, Verrucosispora sediminis Dai et al. 2010, Verrucosispora sp. MS426, strain MS426
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.