STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC62032.1Hypothetical protein. (243 aa)    
Predicted Functional Partners:
SFD13148.1
Protein of unknown function.
   
    0.804
SFC61963.1
Glycine cleavage system transcriptional repressor.
       0.656
def-2
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.656
SFD36687.1
Predicted anti-sigma-YlaC factor YlaD, contains Zn-finger domain.
  
     0.530
SFC61936.1
A/G-specific DNA-adenine glycosylase.
       0.490
SFB96999.1
DivIVA domain-containing protein.
  
     0.454
SFD69244.1
Ferric iron reductase FhuF-like transporter.
  
     0.441
SFC97814.1
Hypothetical protein.
  
     0.430
SFD33961.1
Diguanylate cyclase (GGDEF) domain-containing protein.
    
  0.421
Your Current Organism:
Verrucosispora sediminis
NCBI taxonomy Id: 547162
Other names: CGMCC 4.3550, JCM 15670, V. sediminis, Verrucosispora sediminis Dai et al. 2010, Verrucosispora sp. MS426, strain MS426
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.