STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC88738.1Membrane protein involved in the export of O-antigen and teichoic acid. (529 aa)    
Predicted Functional Partners:
SFC88760.1
O-antigen ligase.
 
  
 0.975
SFC88713.1
Sulfotransferase domain-containing protein.
 
     0.968
SFC88782.1
Capsular polysaccharide biosynthesis protein.
 
  
 0.964
SFC88689.1
Hypothetical protein.
 
     0.951
SFC88617.1
Glycosyltransferase involved in cell wall bisynthesis.
 
    0.917
SFC88826.1
Hypothetical protein.
 
     0.900
SFC88641.1
UDP-N-acetylglucosamine transferase subunit ALG13.
 
     0.823
SFC88662.1
Oligosaccharide biosynthesis protein Alg14 like.
 
     0.810
SFC88804.1
Acetyltransferase (isoleucine patch superfamily).
  
  
 0.803
SFD07310.1
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.790
Your Current Organism:
Verrucosispora sediminis
NCBI taxonomy Id: 547162
Other names: CGMCC 4.3550, JCM 15670, V. sediminis, Verrucosispora sediminis Dai et al. 2010, Verrucosispora sp. MS426, strain MS426
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