STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC88907.1Endo-1,4-beta-xylanase, GH35 family. (421 aa)    
Predicted Functional Partners:
SFC26689.1
Glycosyl hydrolase family 65, N-terminal domain.
  
  
  0.592
SFC88883.1
Shikimate dehydrogenase; Belongs to the shikimate dehydrogenase family.
       0.560
SFC52590.1
Enterochelin esterase.
  
 
   0.516
SFC38233.1
Raffinose/stachyose/melibiose transport system substrate-binding protein.
  
     0.488
SFD78826.1
Ig-like domain (group 3).
  
 
   0.485
SFD12586.1
Hypothetical protein.
    
   0.478
SFB87708.1
Cellulose binding domain-containing protein.
  
     0.447
SFC25640.1
alpha-N-arabinofuranosidase.
  
  
  0.426
SFC54489.1
Poly(3-hydroxybutyrate) depolymerase.
 
 
   0.423
SFC56225.1
Poly(3-hydroxybutyrate) depolymerase.
 
 
   0.422
Your Current Organism:
Verrucosispora sediminis
NCBI taxonomy Id: 547162
Other names: CGMCC 4.3550, JCM 15670, V. sediminis, Verrucosispora sediminis Dai et al. 2010, Verrucosispora sp. MS426, strain MS426
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