STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC97104.1Hypothetical protein; Belongs to the LOG family. (181 aa)    
Predicted Functional Partners:
SFC97079.1
Hypothetical protein.
 
   
0.948
miaA
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
     
 0.708
miaB
tRNA-2-methylthio-N6-dimethylallyladenosine synthase; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
      
 0.686
SFD11008.1
Septum formation protein; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
     
 0.626
SFC97056.1
Hypothetical protein.
       0.528
SFC97126.1
Superfamily I DNA or RNA helicase; Belongs to the helicase family. UvrD subfamily.
       0.435
SFC97149.1
DNA helicase-2 / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily.
       0.435
SFC44370.1
Glucosyl-3-phosphoglycerate synthase.
     
 0.429
SFD40327.1
5'-methylthioadenosine phosphorylase; Purine nucleoside phosphorylase involved in purine salvage.
    
  0.428
SFB82418.1
5'-nucleotidase.
    
  0.427
Your Current Organism:
Verrucosispora sediminis
NCBI taxonomy Id: 547162
Other names: CGMCC 4.3550, JCM 15670, V. sediminis, Verrucosispora sediminis Dai et al. 2010, Verrucosispora sp. MS426, strain MS426
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.