STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC95456.1Chloramphenicol 3-O phosphotransferase. (171 aa)    
Predicted Functional Partners:
SFC95439.1
DNA helicase-2 / ATP-dependent DNA helicase PcrA.
       0.705
SFC53799.1
Lysophospholipase L1.
  
     0.531
SFC17737.1
Glycosyl hydrolases family 39.
  
     0.521
SFD27196.1
Tetratricopeptide repeat-containing protein.
  
     0.418
SFC24217.1
Esterase PHB depolymerase.
  
     0.405
SFC18653.1
SWIM zinc finger.
  
     0.400
Your Current Organism:
Verrucosispora sediminis
NCBI taxonomy Id: 547162
Other names: CGMCC 4.3550, JCM 15670, V. sediminis, Verrucosispora sediminis Dai et al. 2010, Verrucosispora sp. MS426, strain MS426
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.