STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD07847.1Methyltransferase domain-containing protein. (295 aa)    
Predicted Functional Partners:
SFC35953.1
Methyltransferase domain-containing protein.
  
  
  0.705
SFD51418.1
6-methylsalicylic acid synthase.
   
 0.686
SFD19596.1
Amino acid adenylation domain-containing protein.
    
 0.680
SFC53239.1
Amino acid adenylation domain-containing protein.
    
 0.668
SFD74782.1
Phosphopantetheine attachment site.
    
 0.668
SFC62199.1
2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase.
  
 
  0.638
SFD74827.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
    
 0.637
SFD41893.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
    
 0.629
SFD80635.1
Amino acid adenylation domain-containing protein.
    
 0.629
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.616
Your Current Organism:
Verrucosispora sediminis
NCBI taxonomy Id: 547162
Other names: CGMCC 4.3550, JCM 15670, V. sediminis, Verrucosispora sediminis Dai et al. 2010, Verrucosispora sp. MS426, strain MS426
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