STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD13474.1Hypothetical protein. (463 aa)    
Predicted Functional Partners:
SFC74925.1
Hypothetical protein.
  
  0.793
SFD30195.1
Fibronectin type III domain-containing protein.
  
  0.779
SFC79285.1
Hypothetical protein.
  
    0.769
SFD44915.1
Hypothetical protein.
  
  0.767
SFD75502.1
Calpain family cysteine protease.
  
     0.741
SFD25059.1
Hypothetical protein.
  
     0.735
SFD75751.1
Hypothetical protein.
  
 
  0.723
SFD10682.1
Hypothetical protein.
  
  0.722
SFC64730.1
Hypothetical protein.
  
  0.718
SFC53854.1
Acetyltransferase (GNAT) family protein.
  
     0.705
Your Current Organism:
Verrucosispora sediminis
NCBI taxonomy Id: 547162
Other names: CGMCC 4.3550, JCM 15670, V. sediminis, Verrucosispora sediminis Dai et al. 2010, Verrucosispora sp. MS426, strain MS426
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.