STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD13710.1Uncharacterized conserved protein, DUF58 family, contains vWF domain. (436 aa)    
Predicted Functional Partners:
SFD13758.1
Hypothetical protein.
 
    0.976
SFD13777.1
Protein of unknown function.
 
    0.965
SFD13737.1
MoxR-like ATPase.
 
    0.962
SFD13793.1
Hypothetical protein.
       0.888
SFD13689.1
Uncharacterized membrane protein SpoIIM, required for sporulation.
 
  
 0.825
SFD13670.1
Uncharacterized membrane protein YckC, RDD family.
 
    0.788
SFD13814.1
Two-component system, OmpR family, response regulator MtrA.
       0.661
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
      
 0.639
egtD
L-histidine Nalpha-methyltransferase; Catalyzes the SAM-dependent triple methylation of the alpha- amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine; Belongs to the methyltransferase superfamily. EgtD family.
      
 0.637
SFC98049.1
Hypothetical protein.
   
    0.633
Your Current Organism:
Verrucosispora sediminis
NCBI taxonomy Id: 547162
Other names: CGMCC 4.3550, JCM 15670, V. sediminis, Verrucosispora sediminis Dai et al. 2010, Verrucosispora sp. MS426, strain MS426
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