STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD11255.1BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase. (291 aa)    
Predicted Functional Partners:
SFD11238.1
propionyl-CoA carboxylase carboxyltransferase subunit.
 
 
 0.966
SFC39804.1
acetyl-CoA carboxylase biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
 
 
 
 0.958
SFD44871.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase).
  
 0.958
SFD57690.1
propionyl-CoA carboxylase alpha chain.
 
  
 0.951
SFD10935.1
Biotin carboxyl carrier protein /biotin carboxylase.
 
  
 0.950
SFD46442.1
acetyl-CoA carboxylase, biotin carboxylase subunit.
 
  
 0.950
SFC39835.1
acetyl-CoA carboxylase, biotin carboxylase subunit.
 
  
 0.948
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
 
 0.947
SFC98121.1
Biotin-requiring enzyme.
 
 
 0.919
SFD46389.1
Acetyl-CoA carboxylase, carboxyltransferase component.
 
 
 0.905
Your Current Organism:
Verrucosispora sediminis
NCBI taxonomy Id: 547162
Other names: CGMCC 4.3550, JCM 15670, V. sediminis, Verrucosispora sediminis Dai et al. 2010, Verrucosispora sp. MS426, strain MS426
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.