STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD19034.1ABC-2 type transport system ATP-binding protein. (304 aa)    
Predicted Functional Partners:
SFD19012.1
ABC-2 type transport system permease protein.
 
    0.955
SFB88765.1
ABC-2 type transport system permease protein.
 
 
 0.879
SFB96020.1
ABC-type multidrug transport system, ATPase and permease component.
   
 
0.837
SFD06472.1
ABC-2 type transport system permease protein.
 
    0.811
SFD36568.1
ABC-2 type transport system permease protein.
  
    0.796
SFD79220.1
ABC-2 type transport system permease protein.
 
 
  0.668
SFC34632.1
ABC transporter efflux protein, DrrB family.
 
  0.662
SFC90544.1
ABC-2 type transport system permease protein.
 
  0.661
SFD10974.1
ABC-2 type transport system permease protein.
 
 
  0.661
SFB83487.1
ABC-2 type transport system permease protein.
 
 
  0.651
Your Current Organism:
Verrucosispora sediminis
NCBI taxonomy Id: 547162
Other names: CGMCC 4.3550, JCM 15670, V. sediminis, Verrucosispora sediminis Dai et al. 2010, Verrucosispora sp. MS426, strain MS426
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.