STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD36334.1Hypothetical protein. (209 aa)    
Predicted Functional Partners:
SFD36292.1
Hypothetical protein.
 
    0.955
SFD36311.1
Dye decolorizing peroxidase.
 
    0.934
SFD68995.1
Deferrochelatase/peroxidase EfeB.
 
    0.712
SFD66013.1
Integral membrane protein.
   
    0.688
SFC04310.1
Uncharacterized protein YcnI.
  
  
 0.611
SFC90134.1
Uncharacterized protein YcnI.
  
  
 0.611
SFC62131.1
Hypothetical protein.
  
    0.562
SFC04345.1
Copper transport protein.
 
  
0.424
Your Current Organism:
Verrucosispora sediminis
NCBI taxonomy Id: 547162
Other names: CGMCC 4.3550, JCM 15670, V. sediminis, Verrucosispora sediminis Dai et al. 2010, Verrucosispora sp. MS426, strain MS426
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.