STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSC25137.1uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)    
Predicted Functional Partners:
OSC21822.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.893
OSC21544.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.853
OSC25136.1
Hemerythrin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.821
OSC25135.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.600
OSC31662.1
Single-stranded DNA-binding protein; Binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.593
OSC21960.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.593
OSC28047.1
LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.568
OSC25126.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.499
OSC23837.1
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.474
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
     
 0.437
Your Current Organism:
Mycobacterium vulneris
NCBI taxonomy Id: 547163
Other names: CIP 109859, DSM 45247, JCM 18115, M. vulneris, Mycobacterium sp. ACS3670, Mycobacterium sp. ACS4093, Mycobacterium sp. ACS5020, Mycobacterium sp. ICS2043, Mycobacterium sp. NLA000700772, Mycobacterium sp. NLA009601918, Mycobacterium vulneris van Ingen et al. 2009, Mycolicibacterium vulneris, Mycolicibacterium vulneris (van Ingen et al. 2009) Gupta et al. 2018, strain NLA000700772
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