STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSC22214.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (89 aa)    
Predicted Functional Partners:
OSC22205.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.874
OSC22206.1
enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.786
ligC
ATP-dependent DNA ligase; Catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; in mycobacteria LigC has weak intrinsic nick joining activities and is not essential for growth; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.611
ligC-2
ATP-dependent DNA ligase; Catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; in mycobacteria LigC has weak intrinsic nick joining activities and is not essential for growth; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.598
OSC24030.1
Fe-S cluster assembly protein HesB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.550
OSC28413.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.521
OSC22207.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.447
OSC26753.1
HNH nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.441
OSC25874.1
DNA polymerase domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.419
OSC22117.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.412
Your Current Organism:
Mycobacterium vulneris
NCBI taxonomy Id: 547163
Other names: CIP 109859, DSM 45247, JCM 18115, M. vulneris, Mycobacterium sp. ACS3670, Mycobacterium sp. ACS4093, Mycobacterium sp. ACS5020, Mycobacterium sp. ICS2043, Mycobacterium sp. NLA000700772, Mycobacterium sp. NLA009601918, Mycobacterium vulneris van Ingen et al. 2009, Mycolicibacterium vulneris, Mycolicibacterium vulneris (van Ingen et al. 2009) Gupta et al. 2018, strain NLA000700772
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