STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmah_0547Transcriptional regulator, TrmB; COGs: COG3355 transcriptional regulator protein; InterPro IPR002831; PFAM: transcriptional regulator TrmB; SPTR: Q12WW1 Putative uncharacterized protein; PFAM: Sugar-specific transcriptional regulator TrmB. (115 aa)    
Predicted Functional Partners:
Mmah_0546
4Fe-4S ferredoxin iron-sulfur binding domain protein; COGs: COG0348 Polyferredoxin; InterPro IPR001450:IPR017900; KEGG: gsu:GSU0729 iron-sulfur cluster-binding protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: Q12WW0 4Fe-4S ferredoxin, iron-sulfur binding; PFAM: 4Fe-4S binding domain.
       0.827
Mmah_0548
Indolepyruvate ferredoxin oxidoreductase, alpha subunit; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
       0.531
Mmah_0549
Indolepyruvate ferredoxin oxidoreductase, subunit iorB; COGs: COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase gamma subunit; InterPro IPR019752:IPR017719; KEGG: gem:GM21_2860 pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: Pyruvate/ketoisovalerate oxidoreductase; PRIAM: Indolepyruvate ferredoxin oxidoreductase; SPTR: Q12WW9 Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, beta subunit; PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, be [...]
       0.531
Mmah_0550
DNA-(apurinic or apyrimidinic site) lyase; COGs: COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase; InterPro IPR000445:IPR012904:IPR003265; KEGG: OGG1; 8-oxoguanine DNA glycosylase; K03660 N-glycosylase/DNA lyase; PFAM: 8-oxoguanine DNA glycosylase domain protein; helix-hairpin-helix motif; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD family protein; SPTR: Q12WX0 8-oxoguanine DNA glycosylase-like protein; PFAM: 8-oxoguanine DNA glycosylase, N-terminal domain; HhH-GPD superfamily base excision DNA repair protein; TIGRFAM: 8-oxoguanine DNA-glycosyla [...]
       0.521
Your Current Organism:
Methanohalophilus mahii
NCBI taxonomy Id: 547558
Other names: M. mahii DSM 5219, Methanohalophilus mahii DSM 5219, Methanohalophilus mahii str. DSM 5219, Methanohalophilus mahii strain DSM 5219
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