STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmah_1761KEGG: hypothetical protein; SPTR: Q12W07 Putative uncharacterized protein. (384 aa)    
Predicted Functional Partners:
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 3 subfamily.
       0.664
Mmah_1763
tRNA(His)-5'-guanylyltransferase; COGs: COG4021 conserved hypothetical protein; InterPro IPR007537; KEGG: scl:sce6062 hypothetical protein; PFAM: protein of unknown function DUF549; SPTR: Q12W05 Putative uncharacterized protein; PFAM: tRNAHis guanylyltransferase.
       0.497
Mmah_1764
PRC-barrel domain protein; COGs: COG1873 conserved hypothetical protein; InterPro IPR007903; PFAM: PRC-barrel domain protein; SPTR: Q12W04 PRC-barrel protein; PFAM: PRC-barrel domain.
       0.496
Your Current Organism:
Methanohalophilus mahii
NCBI taxonomy Id: 547558
Other names: M. mahii DSM 5219, Methanohalophilus mahii DSM 5219, Methanohalophilus mahii str. DSM 5219, Methanohalophilus mahii strain DSM 5219
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