STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AML34899.1Putative HTH-type transcriptional regulator YdeC. (324 aa)    
Predicted Functional Partners:
rob_1
Multiple antibiotic resistance protein MarA.
  
   0.792
ramA_2
Transcriptional activator RamA.
  
   0.789
marA_2
Multiple antibiotic resistance protein MarA.
  
   0.787
AML35601.1
Multiple antibiotic resistance protein MarA.
  
   0.780
AML34898.1
Thermostable beta-glucosidase B.
 
     0.765
btr
Putative HTH-type transcriptional regulator YobQ.
 
   0.700
AML34897.1
Putative symporter YnaJ.
 
     0.699
AML37144.1
HTH-type transcriptional activator Btr.
  
   0.670
chbR_1
HTH-type transcriptional regulator ChbR.
 
   0.642
nadR_3
Trifunctional NAD biosynthesis/regulator protein NadR.
   
  
 0.584
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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