Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
pcaGProtocatechuate 3,4-dioxygenase alpha chain. (206 aa)    
Predicted Functional Partners:
pcaH
Protocatechuate 3,4-dioxygenase beta chain.
 
0.999
pcaB
3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.995
pobA
P-hydroxybenzoate hydroxylase.
 
  
 0.985
AML35521.1
4-carboxymuconolactone decarboxylase.
 
  
 0.874
catA
Catechol 1,2-dioxygenase.
  
  
 0.855
hpd
Hemolysin VllY.
 
   
 0.792
catD
3-oxoadipate enol-lactonase 1.
 
   
 0.714
gbpR
Putative HTH-type transcriptional regulator YdcI; Belongs to the LysR transcriptional regulatory family.
 
     0.712
pcaI
3-oxoadipate CoA-transferase subunit A.
  
  
 0.712
catC
Muconolactone Delta-isomerase.
  
  
 0.663
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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