STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaHProtocatechuate 3,4-dioxygenase beta chain. (246 aa)    
Predicted Functional Partners:
pcaG
Protocatechuate 3,4-dioxygenase alpha chain.
 
0.999
pcaB
3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.992
pobA
P-hydroxybenzoate hydroxylase.
  
 0.982
AML35521.1
4-carboxymuconolactone decarboxylase.
 
  
 0.870
hpd
Hemolysin VllY.
 
   
 0.825
catD
3-oxoadipate enol-lactonase 1.
 
   
 0.756
gbpR
Putative HTH-type transcriptional regulator YdcI; Belongs to the LysR transcriptional regulatory family.
 
     0.696
pcaI
3-oxoadipate CoA-transferase subunit A.
 
  
 0.641
catC
Muconolactone Delta-isomerase.
 
  
 0.624
pobR_3
Pca regulon regulatory protein.
 
   
 0.526
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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