STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydcOInner membrane protein YdcO. (388 aa)    
Predicted Functional Partners:
catC
Muconolactone Delta-isomerase.
 
   
 0.748
sinR_1
Putative HTH-type transcriptional regulator YdcN.
 
   
 0.681
cbdB
Benzoate 1,2-dioxygenase subunit beta.
 
   
 0.679
catB
Muconate cycloisomerase 1; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
   
 0.631
benC
Toluate 1,2-dioxygenase electron transfer component.
 
   
 0.595
ygiD
Hypothetical protein.
      
 0.593
cbdA_1
2-halobenzoate 1,2-dioxygenase large subunit.
 
   
 0.583
catA
Catechol 1,2-dioxygenase.
 
   
 0.564
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.