STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nodD2_1HTH-type transcriptional activator NahR; Belongs to the LysR transcriptional regulatory family. (307 aa)    
Predicted Functional Partners:
AML36487.1
Putative HTH-type transcriptional regulator YbdO.
  
     0.749
AML34876.1
Acyl-CoA thioester hydrolase YciA.
   
  
 0.553
metC_2
Cystathionine beta-lyase.
   
  
 0.545
metC_1
Cystathionine beta-lyase MetC.
   
  
 0.545
hsrA_1
Putative transporter YebQ.
       0.532
fadE_1
Acyl-coenzyme A dehydrogenase.
   
  
 0.471
serB
Phosphoserine phosphatase.
      
 0.467
serC
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
      
 0.461
AML34332.1
Putative HTH-type transcriptional regulator YczG.
  
     0.436
cysE
Serine acetyltransferase; Belongs to the transferase hexapeptide repeat family.
      
 0.434
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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