STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycaN_2Putative transcriptional regulator. (299 aa)    
Predicted Functional Partners:
abgR_2
HTH-type transcriptional regulator AbgR; Belongs to the LysR transcriptional regulatory family.
  
     0.766
gltC_3
HTH-type transcriptional regulator GltC; Belongs to the LysR transcriptional regulatory family.
  
     0.758
budR
HTH-type transcriptional regulator BudR; Regulator of the budABC operon for 2,3-butanediol synthesis.
  
     0.744
hcaR_1
Transcriptional activator protein LysR; Belongs to the LysR transcriptional regulatory family.
  
     0.742
AML36667.1
Putative HTH-type transcriptional regulator YnfL.
  
     0.737
oxyR_1
Putative HTH-type transcriptional regulator YbhD; Belongs to the LysR transcriptional regulatory family.
  
     0.725
AML36825.1
Putative HTH-type transcriptional regulator YnfL.
  
     0.725
yofA_3
Putative HTH-type transcriptional regulator YfiE; Belongs to the LysR transcriptional regulatory family.
  
     0.725
AML35310.1
HTH-type transcriptional regulator CynR.
  
    0.704
gltC_8
HTH-type transcriptional regulator HdfR; Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon.
  
     0.702
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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