STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AML35621.1Putative sigma-54-dependent transcriptional regulator YgeV. (582 aa)    
Predicted Functional Partners:
AML38340.1
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.839
AML35628.1
Hypothetical protein.
  
    0.608
arcB_1
Aerobic respiration control sensor protein ArcB.
     
 0.518
barA
Signal transduction histidine-protein kinase BarA.
     
 0.484
AML35623.1
Diaminopropionate ammonia-lyase.
 
     0.481
AML35627.1
Hypothetical protein.
  
     0.436
AML35287.1
Putative 24.6 kDa protein in ccpA 3'region.
     
 0.429
AML37211.1
Transcriptional regulatory protein LevR.
  
   
0.426
AML34805.1
Putative signaling protein.
     
 0.411
AML35620.1
Oxalate:formate antiporter.
       0.411
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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