STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
appA_3Oligopeptide-binding protein AppA. (567 aa)    
Predicted Functional Partners:
gsiC_4
Putative peptide permease protein.
 
 0.919
gsiD_4
Putative peptide permease protein.
 
 0.914
porA
Putative pyruvate-flavodoxin oxidoreductase.
  
    0.816
gsiA_13
Oligopeptide transport ATP-binding protein AppF.
  
 0.812
AML38966.1
Putative D,D-dipeptide transport system permease protein DdpC.
 
 0.799
AML38967.1
Putative D,D-dipeptide transport system permease protein DdpB.
 
 0.785
gsiA_14
Oligopeptide transport ATP-binding protein AppD; Belongs to the ABC transporter superfamily.
  
 0.782
AML34993.1
Dipeptide transport system permease protein DppC.
 
 0.780
nikB_1
Nickel transport system permease protein NikB.
 
 0.772
AML34992.1
Glutathione transport system permease protein GsiC.
 
 0.769
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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