Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
gsiA_14Oligopeptide transport ATP-binding protein AppD; Belongs to the ABC transporter superfamily. (326 aa)    
Predicted Functional Partners:
gsiD_4
Putative peptide permease protein.
 
 0.997
AML34993.1
Dipeptide transport system permease protein DppC.
 
 0.987
oppC
Oligopeptide transport system permease protein OppC.
 
 0.987
dppC
Dipeptide transport system permease protein DppC.
 
 0.987
AML38966.1
Putative D,D-dipeptide transport system permease protein DdpC.
 
 0.987
ddpC_4
Putative peptide transport system permease protein.
 
 0.985
nikC
Nickel transport system permease protein NikC.
 
 0.984
gsiD_5
Glutathione transport system permease protein GsiD.
 
 0.983
gsiC_4
Putative peptide permease protein.
 
 
 0.973
gsiA_13
Oligopeptide transport ATP-binding protein AppF.
 
 
0.908
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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