STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hcaR_2Putative HTH-type transcriptional regulator YbhD; Belongs to the LysR transcriptional regulatory family. (296 aa)    
Predicted Functional Partners:
AML34222.1
HTH-type transcriptional regulator GbpR.
  
     0.754
AML35310.1
HTH-type transcriptional regulator CynR.
  
     0.740
gltC_3
HTH-type transcriptional regulator GltC; Belongs to the LysR transcriptional regulatory family.
  
     0.734
AML35240.1
Putative HTH-type transcriptional regulator YafC.
  
     0.716
dmlR_25
Putative HTH-type transcriptional regulator LtrA; Belongs to the LysR transcriptional regulatory family.
  
     0.699
dmlR_3
HTH-type transcriptional activator AaeR; Belongs to the LysR transcriptional regulatory family.
  
     0.664
lpsI
Succinyl-CoA:3-ketoacid coenzyme A transferase subunit A.
       0.529
scoB
Succinyl-CoA:3-ketoacid coenzyme A transferase subunit B.
       0.529
thlA_2
Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.529
fadB2
L-carnitine dehydrogenase.
       0.516
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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