STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybiC_1Putative oxidoreductase YbiC; Belongs to the LDH2/MDH2 oxidoreductase family. (363 aa)    
Predicted Functional Partners:
hpd
Hemolysin VllY.
    
 0.916
aspC
Aspartate aminotransferase.
     
 0.907
tyrB
Aromatic-amino-acid aminotransferase.
     
 0.907
hisC
Histidinol-phosphate aminotransferase.
     
  0.900
dadA
D-amino acid dehydrogenase small subunit; Catalyzes the oxidative deamination of D-amino acids. Participates in the utilization of alanine as the sole source of carbon and nitrogen for growth; Belongs to the DadA oxidoreductase family.
     
 0.900
AML35761.1
D-amino acid dehydrogenase 2 small subunit.
     
 0.900
fumB
Fumarate hydratase class I, aerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.643
fumA
Fumarate hydratase class I, aerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.643
AML35673.1
Hypothetical protein.
       0.569
fumC_1
Fumarate hydratase class II.
    
 0.565
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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