STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmlR_21HTH-type transcriptional activator TtdR; Belongs to the LysR transcriptional regulatory family. (312 aa)    
Predicted Functional Partners:
AML35310.1
HTH-type transcriptional regulator CynR.
  
    0.687
gcvA_5
Glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.686
ynfM_3
Putative transporter YgaY.
 
     0.682
hcaR_1
Transcriptional activator protein LysR; Belongs to the LysR transcriptional regulatory family.
  
     0.665
AML38669.1
HTH-type transcriptional regulator BsdA.
  
     0.658
nac
Nitrogen assimilation regulatory protein nac; Transcriptional activator for the hut, put and ure operons and repressor for the gdh and gltB operons in response to nitrogen limitation. Negative regulator of its own expression.
  
     0.650
cynR_4
Putative HTH-type transcriptional regulator YfeR; Belongs to the LysR transcriptional regulatory family.
  
     0.606
AML36667.1
Putative HTH-type transcriptional regulator YnfL.
  
     0.589
budR
HTH-type transcriptional regulator BudR; Regulator of the budABC operon for 2,3-butanediol synthesis.
  
     0.581
allS_5
Putative HTH-type transcriptional regulator YdhB; Belongs to the LysR transcriptional regulatory family.
  
   
 0.580
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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