STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbdA_2Putative dioxygenase subunit alpha YeaW; Converts carnitine to trimethylamine and malic semialdehyde. (374 aa)    
Predicted Functional Partners:
ophA1_3
Putative dioxygenase subunit beta YeaX; Converts carnitine to trimethylamine and malic semialdehyde.
 
  
 0.890
cbdB
Benzoate 1,2-dioxygenase subunit beta.
 
 
 0.814
hcr
NADH oxidoreductase hcr.
  
 0.791
AML38756.1
Anthranilate 1,2-dioxygenase small subunit.
 
 
 0.755
caiT
Putative transporter YeaV; Belongs to the BCCT transporter (TC 2.A.15) family.
  
  
 0.720
gabD_1
Succinate-semialdehyde dehydrogenase [NADP(+)] GabD; Belongs to the aldehyde dehydrogenase family.
  
    0.720
hmp_2
1,2-phenylacetyl-CoA epoxidase, subunit E.
 
  
 0.645
AML38754.1
Vanillate O-demethylase oxidoreductase.
 
  
 0.597
lvr
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase.
  
  
  0.578
AML35308.1
Vanillate O-demethylase oxidoreductase.
 
  
 0.567
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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