Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yccUHypothetical protein. (138 aa)    
Predicted Functional Partners:
metC_2
Cystathionine beta-lyase.
 
      0.899
metB_3
Cystathionine gamma-synthase.
 
      0.899
metC_1
Cystathionine beta-lyase MetC.
 
      0.743
msrB
Peptide methionine sulfoxide reductase MsrB.
 
      0.713
mgsA
Methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate.
       0.551
AML34473.1
Hypothetical protein.
  
    0.514
AML34478.1
Ferric uptake regulation protein.
  
    0.514
fur
Ferric uptake regulation protein; Belongs to the Fur family.
  
    0.514
zur
Zinc uptake regulation protein; Belongs to the Fur family.
  
    0.514
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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