Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AML36186.1Putative L,D-transpeptidase YcbB. (588 aa)    
Predicted Functional Partners:
AML36185.1
Hypothetical protein.
 
   
 0.888
ybiS
Putative L,D-transpeptidase YbiS.
 
  
 0.685
erfK
Putative L,D-transpeptidase ErfK/SrfK; Belongs to the YkuD family.
 
  
 0.667
dacB_3
D-alanyl-D-alanine carboxypeptidase DacB.
  
  
 0.644
ynhG_2
Putative L,D-transpeptidase YnhG.
 
  
 0.602
ycfS
Putative L,D-transpeptidase YcfS.
 
  
 0.582
dacC_2
D-alanyl-D-alanine carboxypeptidase DacC; Belongs to the peptidase S11 family.
   
 
 0.581
dacA_2
D-alanyl-D-alanine carboxypeptidase DacA.
   
 
 0.563
dacD
D-alanyl-D-alanine carboxypeptidase DacD; Belongs to the peptidase S11 family.
   
 
 0.560
AML36184.1
Hypothetical protein.
       0.533
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.