Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ycaORibosomal protein S12 methylthiotransferase accessory factor YcaO. (586 aa)    
Predicted Functional Partners:
AML35098.1
Putative 24.3 kDa protein.
  
  
 0.785
ydjA
Putative NAD(P)H nitroreductase YdjA.
 
  
 0.660
ybhF_3
Putative ABC transporter ATP-binding protein YhiH.
  
  
 0.650
rutE_1
Putative malonic semialdehyde reductase RutE.
  
  
 0.606
nfsA
Oxygen-insensitive NADPH nitroreductase; Belongs to the flavin oxidoreductase frp family.
  
  
 0.606
nfnB
Oxygen-insensitive NAD(P)H nitroreductase.
  
  
 0.606
macB
Macrolide export ATP-binding/permease protein MacB; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
      
 0.551
moaB
Molybdenum cofactor biosynthesis protein B; May be involved in the biosynthesis of molybdopterin. Belongs to the MoaB/Mog family.
      
 0.523
ybhS
Inner membrane transport permease YbhS.
  
  
 0.517
ybhR_2
Inner membrane transport permease YbhR.
  
  
 0.517
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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