STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycaORibosomal protein S12 methylthiotransferase accessory factor YcaO. (586 aa)    
Predicted Functional Partners:
AML35098.1
Putative 24.3 kDa protein.
  
  
 0.796
paaA
1,2-phenylacetyl-CoA epoxidase, subunit A.
      
 0.674
tldD_2
Protein TldD.
      
 0.674
ybhF_3
Putative ABC transporter ATP-binding protein YhiH.
  
  
 0.645
ydjA
Putative NAD(P)H nitroreductase YdjA.
 
  
 0.643
rutE_1
Putative malonic semialdehyde reductase RutE.
  
  
 0.595
nfsA
Oxygen-insensitive NADPH nitroreductase; Belongs to the flavin oxidoreductase frp family.
  
  
 0.595
nfnB
Oxygen-insensitive NAD(P)H nitroreductase.
  
  
 0.595
AML36204.1
Hypothetical protein.
       0.486
AML36205.1
Hypothetical protein.
       0.486
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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