cydD protein (Klebsiella aerogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

cydD

ATP-binding/permease protein CydD. (588 aa)

Predicted Functional Partners:

msbA_2

0.999

cydB_3

0.924

cydA_4

0.911

ybbL_2

0.902

pstB

0.899

glnQ_3

0.883

proV_2

0.881

artM_9

0.879

metN_3

0.859

AML36002.1

0.806

Your Current Organism:

Klebsiella aerogenes

NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AML36002.1	cydD	EAG7_02257	EAG7_02475	Fe(3+) ions import ATP-binding protein FbpC.	ATP-binding/permease protein CydD.	0.806
AML36002.1	msbA_2	EAG7_02257	EAG7_02476	Fe(3+) ions import ATP-binding protein FbpC.	ATP-binding/permease protein CydC.	0.821
artM_9	cydD	EAG7_03039	EAG7_02475	Glutamine transport ATP-binding protein GlnQ.	ATP-binding/permease protein CydD.	0.879
cydA_4	cydB_3	EAG7_02654	EAG7_02653	Cytochrome bd-I ubiquinol oxidase subunit 1.	Cytochrome bd-I ubiquinol oxidase subunit 2.	0.999
cydA_4	cydD	EAG7_02654	EAG7_02475	Cytochrome bd-I ubiquinol oxidase subunit 1.	ATP-binding/permease protein CydD.	0.911
cydA_4	msbA_2	EAG7_02654	EAG7_02476	Cytochrome bd-I ubiquinol oxidase subunit 1.	ATP-binding/permease protein CydC.	0.840
cydB_3	cydA_4	EAG7_02653	EAG7_02654	Cytochrome bd-I ubiquinol oxidase subunit 2.	Cytochrome bd-I ubiquinol oxidase subunit 1.	0.999
cydB_3	cydD	EAG7_02653	EAG7_02475	Cytochrome bd-I ubiquinol oxidase subunit 2.	ATP-binding/permease protein CydD.	0.924
cydB_3	msbA_2	EAG7_02653	EAG7_02476	Cytochrome bd-I ubiquinol oxidase subunit 2.	ATP-binding/permease protein CydC.	0.877
cydD	AML36002.1	EAG7_02475	EAG7_02257	ATP-binding/permease protein CydD.	Fe(3+) ions import ATP-binding protein FbpC.	0.806
cydD	artM_9	EAG7_02475	EAG7_03039	ATP-binding/permease protein CydD.	Glutamine transport ATP-binding protein GlnQ.	0.879
cydD	cydA_4	EAG7_02475	EAG7_02654	ATP-binding/permease protein CydD.	Cytochrome bd-I ubiquinol oxidase subunit 1.	0.911
cydD	cydB_3	EAG7_02475	EAG7_02653	ATP-binding/permease protein CydD.	Cytochrome bd-I ubiquinol oxidase subunit 2.	0.924
cydD	glnQ_3	EAG7_02475	EAG7_02568	ATP-binding/permease protein CydD.	Glutamine transport ATP-binding protein GlnQ.	0.883
cydD	metN_3	EAG7_02475	EAG7_03132	ATP-binding/permease protein CydD.	Methionine import ATP-binding protein MetN 1; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.859
cydD	msbA_2	EAG7_02475	EAG7_02476	ATP-binding/permease protein CydD.	ATP-binding/permease protein CydC.	0.999
cydD	proV_2	EAG7_02475	EAG7_05211	ATP-binding/permease protein CydD.	Glycine betaine/L-proline transport ATP-binding protein ProV.	0.881
cydD	pstB	EAG7_02475	EAG7_04085	ATP-binding/permease protein CydD.	Phosphate import ATP-binding protein PstB; Belongs to the ABC transporter superfamily.	0.899
cydD	ybbL_2	EAG7_02475	EAG7_02880	ATP-binding/permease protein CydD.	Putative ABC transporter ATP-binding protein YbbL.	0.902
glnQ_3	cydD	EAG7_02568	EAG7_02475	Glutamine transport ATP-binding protein GlnQ.	ATP-binding/permease protein CydD.	0.883

page 1 of 2

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About