STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cspDCold shock-like protein CspD. (73 aa)    
Predicted Functional Partners:
fadD_2
Long-chain-fatty-acid--CoA ligase.
   
   0.596
ychH
Hypothetical protein.
   
    0.596
xthA
Exodeoxyribonuclease III.
   
 0.567
clpS
ATP-dependent Clp protease adapter protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
  
  
 0.494
mdtI
Spermidine export protein MdtI; Catalyzes the excretion of spermidine.
      
 0.491
mdtJ
Spermidine export protein MdtJ; Catalyzes the excretion of spermidine.
      
 0.491
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
   
  
 0.471
dadA
D-amino acid dehydrogenase small subunit; Catalyzes the oxidative deamination of D-amino acids. Participates in the utilization of alanine as the sole source of carbon and nitrogen for growth; Belongs to the DadA oxidoreductase family.
   
    0.465
AML35761.1
D-amino acid dehydrogenase 2 small subunit.
   
    0.465
htpG
Chaperone protein HtpG; Molecular chaperone. Has ATPase activity.
  
 
 0.465
Your Current Organism:
Klebsiella aerogenes
NCBI taxonomy Id: 548
Other names: ATCC 13048, Aerobacter aerogenes, CIP 60.86, DSM 30053, Enterobacter aerogenes, HAMBI 101, IFO 13534, K. aerogenes, KCTC 2190, Klebsiella mobilis, LMG 2094, LMG:2094, NBRC 13534, NCAIM B.01467, NCTC 10006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.